Md. Altaf-Ul-Amin,: search on Z-Library

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1

Supervised Clustering Based on DPClusO: Prediction of Plant-Disease Relations Using Jamu Formulas of KNApSAcK Database

Wijaya, Sony Hartono, Husnawati, Husnawati, Afendi, Farit Mochamad, Batubara, Irmanida, Darusman, Latifah K., Altaf-Ul-Amin, Md., Sato, Tetsuo, Ono, Naoaki, Sugiura, Tadao, Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 1.25 MB

english, 2014

2

[IEEE 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE) - Taichung, Taiwan (2018.10.29-2018.10.31)] 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering (BIBE) - Prediction of Plant-Disease Relations Based on Unani Formulas by Network Analysis

Hossain, Shaikh Farhad, Wijaya, Sony Hartono, Huang, Ming, Batubara, Irmanida, Kanaya, Shigehiko, Farhad, Md. Altaf-Ul-Amin

Year:

2018

File:

PDF, 7 KB

2018

3

Metabolomic Studies of Indonesian Jamu Medicines: Prediction of Jamu Efficacy and Identification of Important Metabolites

Wijaya, Sony Hartono, Batubara, Irmanida, Nishioka, Takaaki, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

Molecular Informatics

Year:

2017

Language:

english

File:

PDF, 2.73 MB

english, 2017

4

Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks

Eguchi, Ryohei, Ono, Naoaki, Hirai Morita, Aki, Katsuragi, Tetsuo, Nakamura, Satoshi, Huang, Ming, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

BMC Bioinformatics

Year:

2019

Language:

english

File:

PDF, 3.20 MB

english, 2019

5

A novel plant classification method based on similarities in chemical structures of metabolite contents obtained from the KNApSAcK database

Liu, K., Altaf-Ul-Amin, Md., Abdullah, A.A., Morita, A.H., Shiraishi, M., Kanaya, S.

Journal:

Acta Horticulturae

Year:

2017

Language:

english

File:

PDF, 426 KB

english, 2017

6

DATA MINING METHODS FOR OMICS AND KNOWLEDGE OF CRUDE MEDICINAL PLANTS TOWARD BIG DATA BIOLOGY

Afendi, Farit M., Ono, Naoaki, Nakamura, Yukiko, Nakamura, Kensuke, Darusman, Latifah K., Kibinge, Nelson, Morita, Aki Hirai, Tanaka, Ken, Horai, Hisayuki, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

Computational and Structural Biotechnology Journal

Year:

2013

Language:

english

File:

PDF, 4.33 MB

english, 2013

7

Systems Biology in the Context of Big Data and Networks

Altaf-Ul-Amin, Md., Afendi, Farit Mochamad, Kiboi, Samuel Kuria, Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 1005 KB

english, 2014

8

[IEEE 2010 IEEE International Conference on Data Mining Workshops (ICDMW) - Sydney, TBD, Australia (2010.12.13-2010.12.13)] 2010 IEEE International Conference on Data Mining Workshops - System Biology Approach for Elucidating the Relationship Between Indonesian Herbal Plants and the Efficacy of Jamu

Afendi, Farit Mochamad, Darusman, Latifah K., Hirai, Aki, Altaf-Ul-Amin, Md., Takahashi, Hiroki, Nakamura, Kensuke, Kanaya, Shigehiko

Year:

2010

Language:

english

File:

PDF, 801 KB

english, 2010

9

Efficacy Prediction of Jamu Formulations by PLS Modeling

M. Afendi, Farit, K. Darusman, Latifah, Hirai Morita, Aki, Altaf-Ul-Amin, Md., Takahashi, Hiroki, Nakamura, Kensuke, Tanaka, Ken, Kanaya, Shigehiko

Journal:

Current Computer - Aided Drug Design

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

10

[IEEE Comput. Soc Eleventh Asian Test Symposium - Guam, USA (18-20 Nov. 2002)] Proceedings of the 11th Asian Test Symposium, 2002. (ATS '02). - Design for two-pattern testability of controller-data path circuits

Altaf-Ul-Amin, Md., Ohtake, S., Fujiwara, H.

Year:

2002

Language:

english

File:

PDF, 361 KB

english, 2002

11

Predicting Rank of Japanese Green Teas by Derivative Profiles of Spectra Obtained from Fourier Transform Near-Infrared Reflectance Spectroscopy

Ikeda, Tatsuhiko, Md. Altaf-Ul-Amin,, Aziza Kawsar Parvin,, Kanaya, Shigehiko, Yonetani, Tsutomu, Fukusaki, Eiichiro

Journal:

Journal of Computer Aided Chemistry

Year:

2008

Language:

english

File:

PDF, 289 KB

english, 2008

12

Integration of Residue Attributes for Sequence Diversity Characterization of Terpenoid Enzymes

Kibinge, Nelson, Ikeda, Shun, Ono, Naoaki, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 2.61 MB

english, 2014

13

A Glimpse to Background and Characteristics of Major Molecular Biological Networks

Altaf-Ul-Amin, Md., Katsuragi, Tetsuo, Sato, Tetsuo, Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2015

Language:

english

File:

PDF, 1.82 MB

english, 2015

14

Development and implementation of an algorithm for detection of protein complexes in large interaction networks

Md Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 407 KB

english, 2006

15

Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks

Antonio, Victor Andrew A., Ono, Naoaki, Saito, Akira, Sato, Tetsuo, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

International Journal of Computer Assisted Radiology and Surgery

Year:

2018

Language:

english

File:

PDF, 1.50 MB

english, 2018

16

Implementation of BiClusO and its comparison with other biclustering algorithms

Karim, Mohammad Bozlul, Kanaya, Shigehiko, Altaf-Ul-Amin, Md.

Journal:

Applied Network Science

Year:

2019

Language:

english

File:

PDF, 3.29 MB

english, 2019

17

Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach

Altaf-Ul-Amin, Md., Karim, Mohammad Bozlul, Hu, Pingzhao, ONO, Naoaki, Kanaya, Shigehiko

Journal:

BMC Medical Genomics

Year:

2020

Language:

english

File:

PDF, 2.50 MB

english, 2020

18

Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships

Maeno, Hijiri, Altaf-Ul-Amin, Md., Shinbo, Yoko, Kurokawa, Ken, Ogasawara, Naotake, Kanaya, Shigehiko

Journal:

IPSJ Digital Courier

Year:

2006

Language:

english

File:

PDF, 562 KB

english, 2006

19

[Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]DPClusOST: A Software Tool for General Purpose Graph Clustering

Bozlul Karim, Mohammad, Wakamatsu, Nobutaka, Altaf-Ul-Amin, Md.

Journal:

Journal of Computer Aided Chemistry

Year:

2017

Language:

english

File:

PDF, 2.51 MB

english, 2017

20

Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms

Tuji, Hisashi, Altaf-Ul-Amin, Md., Arita, Masanori, Nishio, Hirokazu, Shinbo, Yoko, Kurokawa, Ken, Kanaya, Shigehiko

Journal:

IPSJ Digital Courier

Year:

2006

Language:

english

File:

PDF, 732 KB

english, 2006

21

[IEEE Tenth Asian Test Symposium - Kyoto, Japan (19-21 Nov. 2001)] Proceedings 10th Asian Test Symposium - Design for hierarchical two-pattern testability of data paths

Altaf-Ul-Amin, Md., Ohtake, S., Fujiwara, H.

Year:

2001

Language:

english

File:

PDF, 641 KB

english, 2001

22

Spherical SOM and Arrangement of Neurons Using Helix on Sphere

Nishio, Hirokazu, Altaf-Ul-Amin, Md., Kurokawa, Ken, Kanaya, Shigehiko

Journal:

IPSJ Digital Courier

Year:

2006

Language:

english

File:

PDF, 405 KB

english, 2006

23

An Unsupervised Approach to Predict Functional Relations between Genes Based on Expression Data

Altaf-Ul-Amin, Md., Katsuragi, Tetsuo, Sato, Tetsuo, Ono, Naoaki, Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 627 KB

english, 2014

24

[IEEE 2015 2nd International Conference on Biomedical Engineering (ICoBE) - Penang, Malaysia (2015.3.30-2015.3.31)] 2015 2nd International Conference on Biomedical Engineering (ICoBE) - Analysis of volatile metabolites emitted by various species to reveal their roles in chemical ecology and healthcare

Abdullah, Azian Azamimi, Altaf-Ul-Amin, Md., Nishioka, Takaaki, Katsuragi, Tetsuo, Ono, Naoaki, Zakaria, Ammar, Shakaff, Ali Yeon Md, Kanaya, Shigehiko

Year:

2015

Language:

english

File:

PDF, 1.00 MB

english, 2015

25

Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry

Hiroki Takahashi, Kosuke Kai, Yoko Shinbo, Kenichi Tanaka, Daisaku Ohta, Taku Oshima, Md. Altaf-Ul-Amin, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya

Journal:

Analytical and Bioanalytical Chemistry

Year:

2008

Language:

english

File:

PDF, 406 KB

english, 2008

26

Development and Mining of a Volatile Organic Compound Database

Abdullah, Azian Azamimi, Altaf-Ul-Amin, Md., Ono, Naoaki, Sato, Tetsuo, Sugiura, Tadao, Morita, Aki Hirai, Katsuragi, Tetsuo, Muto, Ai, Nishioka, Takaaki, Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2015

Language:

english

File:

PDF, 3.38 MB

english, 2015

27

[Dedicated to Prof. T. Okada and Prof. T. Nishioka: data science in chemistry]Centrality Values of Yeast Proteins in a PPI Network Are Related to Their Essentiality and Functions

Altaf-Ul-Amin, Md., Hartono Wijaya, Sony, Fitra Chandra, Dodi, Kanaya, Shigehiko

Journal:

Journal of Computer Aided Chemistry

Year:

2017

Language:

english

File:

PDF, 4.05 MB

english, 2017

28

Comparison of Clustering Methods in the Context of Chemical Structure Similarity Based Classification of VOCs

Abdullah, Azian Azamimi, Altaf-Ul-Amin, Md., Ono, Naoaki, Yusuf, Nurlisa, Zakaria, Ammar, Nishioka, Takaaki, Kanaya, Shigehiko

Journal:

Procedia Chemistry

Year:

2016

Language:

english

File:

PDF, 631 KB

english, 2016

29

An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease

Eguchi, Ryohei, Karim, Mohammand Bozlul, Hu, Pingzhao, Sato, Tetsuo, Ono, Naoaki, Kanaya, Shigehiko, Altaf-Ul-Amin, Md.

Journal:

BMC Bioinformatics

Year:

2018

Language:

english

File:

PDF, 1.34 MB

english, 2018

30

MetalMine: a database of functional metal-binding sites in proteins

Nakamura, Kensuke, Hirai, Aki, Altaf-Ul-Amin, Md., Takahashi, Hiroki

Journal:

Plant Biotechnology

Year:

2009

Language:

english

File:

PDF, 2.58 MB

english, 2009

31

A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement

Kido, Koshiro, Tamura, Toshiyo, Ono, Naoaki, Altaf-Ul-Amin, MD., Sekine, Masaki, Kanaya, Shigehiko, Huang, Ming

Journal:

Year:

2019

Language:

english

File:

PDF, 1.85 MB

english, 2019

32

Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters

Higa, Yuki, Kim, Young-Soo, Altaf-Ul-Amin, Md., Huang, Ming, Ono, Naoaki, Kanaya, Shigehiko

Journal:

Year:

2020

File:

PDF, 1.37 MB

2020

33

The entire organization of transcription units on theBacillus subtilisgenome

Hirokazu Kobayashi, Joe Akitomi, Nobuyuki Fujii, Kazuo Kobayashi, Md Altaf-Ul-Amin, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya

Journal:

Year:

2007

Language:

english

File:

PDF, 492 KB

english, 2007

34

Big Data and Network Biology

Kanaya, Shigehiko, Altaf-Ul-Amin, Md., Kiboi, Samuel Kuria, Mochamad Afendi, Farit

Journal:

BioMed Research International

Year:

2014

Language:

english

File:

PDF, 1.06 MB

english, 2014

35

Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes

Masayoshi Wada, Hiroki Takahashi, Md. Altaf-Ul-Amin, Kensuke Nakamura, Masami Y. Hirai, Daisaku Ohta, Shigehiko Kanaya

Journal:

Year:

2012

Language:

english

File:

PDF, 581 KB

english, 2012

36

[IEEE 2007 International Conference on Information and Communication Technology - Dhaka, Bangladesh (2007.03.7-2007.03.9)] 2007 International Conference on Information and Communication Technology - A density-periphery based graph clustering software developed for detection of protein complexes in interaction networks

Altaf-Ul-Amin, Md., Tsuji, Hisashi, Kurokawa, Ken, Ashahi, Hiroko, Shinbo, Yoko, Kanaya, Shigehiko

Year:

2007

Language:

english

File:

PDF, 3.85 MB

english, 2007

37

Utilization of KNApSAcK Family Databases for Developing Herbal Medicine Systems

Hartono Wijaya, Sony, Tanaka, Yuki, Altaf-Ul-Amin, Md., Hirai Morita, Aki, Mochamad Afendi, Farit, Batubara, Irmanida, Ono, Naoaki, K. Darusman, Latifah, Kanaya, Shigehiko

Journal:

Journal of Computer Aided Chemistry

Year:

2016

Language:

english

File:

PDF, 1.47 MB

english, 2016

38

[IEEE 21st International Conference on Data Engineering Workshops (ICDEW'05) - Tokyo, Japan ()] 21st International Conference on Data Engineering Workshops (ICDEW'05) - Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach

Altaf-Ul-Amin, Md., Koma, T., Kurokawa, K., Kanaya, S.

Year:

2005

Language:

english

File:

PDF, 192 KB

english, 2005

39

Metabolomics of Medicinal Plants: The Importance of Multivariate Analysis of Analytical Chemistry Data

Okada, Taketo, Mochamad Afendi, Farit, Altaf-Ul-Amin, Md., Takahashi, Hiroki, Nakamura, Kensuke, Kanaya, Shigehiko

Journal:

Current Computer - Aided Drug Design

Year:

2010

Language:

english

File:

PDF, 545 KB

english, 2010

40

Big Data and Network Biology 2016

Kanaya, Shigehiko, Altaf-Ul-Amin, Md., Kiboi, Samuel K., Afendi, Farit Mochamad

Journal:

BioMed Research International

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

41

Reference Module in Life Sciences || Investigating Metabolic Pathways and Networks

Altaf-Ul-Amin, Md.

Year:

2018

Language:

english

File:

PDF, 1.41 MB

english, 2018

42

[IEEE Comput. Soc Ninth Great Lakes Symposium on VLSI - Ypsilanti, MI, USA (4-6 March 1999)] Proceedings Ninth Great Lakes Symposium on VLSI - VHDL design of a test processor based on mixed-mode test generation

Altaf-Ul-Amin, Md., Darus, Z.M.

Year:

1999

Language:

english

File:

PDF, 44 KB

english, 1999

43

Novel Approach to Classify Plants Based on Metabolite-Content Similarity

Liu, Kang, Abdullah, Azian Azamimi, Huang, Ming, Nishioka, Takaaki, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

BioMed Research International

Year:

2017

Language:

english

File:

PDF, 6.08 MB

english, 2017

44

Polycystic ovarian syndrome novel proteins and significant pathways identified using graph clustering approach

Afiqah-Aleng, Nor, Altaf-Ul-Amin, Md., Kanaya, Shigehiko, Mohamed-Hussein, Zeti-Azura

Journal:

Reproductive BioMedicine Online

Year:

2019

File:

PDF, 1.39 MB

2019

45

Dynamics of Time-Lagged Gene-to-Metabolite Networks of Escherichia coli Elucidated by Integrative Omics Approach

Takahashi, Hiroki, Morioka, Ryoko, Ito, Ryosuke, Oshima, Taku, Altaf-Ul-Amin, Md., Ogasawara, Naotake, Kanaya, Shigehiko

Journal:

Omics A Journal of Integrative Biology

Year:

2011

Language:

english

File:

PDF, 1.09 MB

english, 2011

46

Embedding of Molecular Structure Using Molecular Hypergraph Variational Autoencoder with Metric Learning

Koge, Daiki, ONO, Naoaki, Huang, Ming, Altaf-Ul-Amin, Md., Kanaya, Shigehiko

Journal:

Molecular Informatics

Year:

2020

File:

PDF, 1.18 MB

2020

47

Clustering of 3D-Structure Similarity Based Network of Secondary Metabolites Reveals Their Relationships with Biological Activities

Ohtana, Yuki, Abdullah, Azian Azamimi, Altaf-Ul-Amin, Md., Huang, Ming, Ono, Naoaki, Sato, Tetsuo, Sugiura, Tadao, Horai, Hisayuki, Nakamura, Yukiko, Morita Hirai, Aki, Lange, Klaus W., Kibinge, Nelso

Journal:

Molecular Informatics

Year:

2014

Language:

english

File:

PDF, 2.56 MB

english, 2014

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